From 04063d664b8ef478122afef2830dfb3accb38f46 Mon Sep 17 00:00:00 2001
From: JannikStreek <Jannik.streek@gmail.com>
Date: Wed, 21 Feb 2024 21:50:11 +0100
Subject: [PATCH] cleanup after workspace refactoring (#6174)

* fix bin folder and workflows as far its possible

cleanup of dockerfile

changed paths of scripts

add lock file

fix working directory for workflows

fix windows bin

fix travis (is travis used anyway?)

fix package refs

remove pnpm-lock file in root as these conflicts with the docker volume setup

optimize comments

use install again

refactor prod image call to run

fix --workspace can only be used inside a workspace

correct comment

try fix pipeline

try fix pipeline for upgrade-from-latest-release

install all deps

smaller adjustments

save

update dockerfile

remove workspace command

fix run test command

start repair latest release workflow

start repair latest release workflow

start repair latest release workflow

further repairs

* remove test plugin from docker compose
---
 .github/workflows/backend-tests.yml           |  27 +++----
 .github/workflows/docker.yml                  |   2 +-
 .github/workflows/frontend-admin-tests.yml    |   2 +-
 .github/workflows/frontend-tests.yml          |   4 +-
 .github/workflows/load-test.yml               |   6 +-
 .github/workflows/perform-type-check.yml      |   1 -
 .github/workflows/rate-limit.yml              |   2 +-
 .../workflows/upgrade-from-latest-release.yml |  67 +++++++++---------
 .github/workflows/windows.yml                 |   8 +--
 .gitignore                                    |   3 +-
 .travis.yml                                   |  14 ++--
 Dockerfile                                    |  29 ++------
 bin                                           |   1 -
 {src/bin => bin}/buildDebian.sh               |   2 +-
 {src/bin => bin}/buildForWindows.sh           |   2 +-
 {src/bin => bin}/checkAllPads.js              |   6 +-
 {src/bin => bin}/checkPad.js                  |   6 +-
 {src/bin => bin}/cleanRun.sh                  |   6 +-
 .../bin => bin}/convertSettings.json.template |   0
 {src/bin => bin}/createRelease.sh             |   2 +-
 {src/bin => bin}/createUserSession.js         |   4 +-
 {src/bin => bin}/deb-src/DEBIAN/control       |   0
 {src/bin => bin}/deb-src/DEBIAN/postinst      |   0
 {src/bin => bin}/deb-src/DEBIAN/preinst       |   0
 {src/bin => bin}/deb-src/DEBIAN/prerm         |   0
 .../deb-src/sysroot/etc/init/etherpad.conf    |   2 +-
 {src/bin => bin}/debugRun.sh                  |   6 +-
 {src/bin => bin}/deleteAllGroupSessions.js    |   4 +-
 {src/bin => bin}/deletePad.js                 |   4 +-
 {src/bin => bin}/doc/LICENSE                  |   0
 {src/bin => bin}/doc/README.md                |   0
 {src/bin => bin}/doc/generate.js              |   0
 {src/bin => bin}/doc/html.js                  |   0
 {src/bin => bin}/doc/json.js                  |   0
 {src/bin => bin}/etherpad-healthcheck         |   0
 {src/bin => bin}/extractPadData.js            |   6 +-
 {src/bin => bin}/fastRun.sh                   |   4 +-
 {src/bin => bin}/functions.sh                 |   0
 {src/bin => bin}/importSqlFile.js             |   2 +-
 {src/bin => bin}/installDeps.sh               |  15 ++--
 {src/bin => bin}/installOnWindows.bat         |   4 +-
 {src/bin => bin}/migrateDirtyDBtoRealDB.js    |   4 +-
 {src/bin => bin}/nsis/README.md               |   0
 {src/bin => bin}/nsis/brand.ico               | Bin
 {src/bin => bin}/nsis/etherpad.nsi            |   0
 {src/bin => bin}/plugins/README.md            |   0
 {src/bin => bin}/plugins/checkPlugin.js       |  24 +++----
 {src/bin => bin}/plugins/getCorePlugins.sh    |   2 +-
 {src/bin => bin}/plugins/lib/CONTRIBUTING.md  |   0
 {src/bin => bin}/plugins/lib/LICENSE          |   0
 {src/bin => bin}/plugins/lib/README.md        |   0
 .../bin => bin}/plugins/lib/backend-tests.yml |   4 +-
 {src/bin => bin}/plugins/lib/dependabot.yml   |   0
 {src/bin => bin}/plugins/lib/eslintrc.cjs     |   0
 .../plugins/lib/frontend-tests.yml            |   4 +-
 {src/bin => bin}/plugins/lib/gitignore        |   0
 {src/bin => bin}/plugins/lib/npmpublish.yml   |   0
 {src/bin => bin}/plugins/listOfficialPlugins  |   2 +-
 {src/bin => bin}/plugins/reTestAllPlugins.sh  |   2 +-
 {src/bin => bin}/plugins/stalePlugins.js      |   0
 .../plugins/updateAllPluginsScript.sh         |   2 +-
 {src/bin => bin}/plugins/updateCorePlugins.sh |   2 +-
 {src/bin => bin}/push-after-release.sh        |   2 +-
 {src/bin => bin}/rebuildPad.js                |  12 ++--
 {src/bin => bin}/release.js                   |   6 +-
 {src/bin => bin}/repairPad.js                 |   8 +--
 {src/bin => bin}/run.sh                       |   7 +-
 {src/bin => bin}/safeRun.sh                   |   4 +-
 {src/bin => bin}/updatePlugins.sh             |   2 +-
 doc/docker.adoc                               |   2 +-
 docker-compose.yml                            |  10 ++-
 package.json                                  |   4 +-
 pnpm-workspace.yaml                           |   2 +
 src/package.json                              |   2 +-
 src/tests/frontend/travis/runner.sh           |   2 +-
 75 files changed, 158 insertions(+), 192 deletions(-)
 delete mode 120000 bin
 rename {src/bin => bin}/buildDebian.sh (96%)
 rename {src/bin => bin}/buildForWindows.sh (98%)
 rename {src/bin => bin}/checkAllPads.js (79%)
 rename {src/bin => bin}/checkPad.js (75%)
 rename {src/bin => bin}/cleanRun.sh (89%)
 rename {src/bin => bin}/convertSettings.json.template (100%)
 rename {src/bin => bin}/createRelease.sh (99%)
 rename {src/bin => bin}/createUserSession.js (94%)
 rename {src/bin => bin}/deb-src/DEBIAN/control (100%)
 rename {src/bin => bin}/deb-src/DEBIAN/postinst (100%)
 rename {src/bin => bin}/deb-src/DEBIAN/preinst (100%)
 rename {src/bin => bin}/deb-src/DEBIAN/prerm (100%)
 rename {src/bin => bin}/deb-src/sysroot/etc/init/etherpad.conf (90%)
 rename {src/bin => bin}/debugRun.sh (87%)
 rename {src/bin => bin}/deleteAllGroupSessions.js (92%)
 rename {src/bin => bin}/deletePad.js (90%)
 rename {src/bin => bin}/doc/LICENSE (100%)
 rename {src/bin => bin}/doc/README.md (100%)
 rename {src/bin => bin}/doc/generate.js (100%)
 rename {src/bin => bin}/doc/html.js (100%)
 rename {src/bin => bin}/doc/json.js (100%)
 rename {src/bin => bin}/etherpad-healthcheck (100%)
 rename {src/bin => bin}/extractPadData.js (92%)
 rename {src/bin => bin}/fastRun.sh (91%)
 rename {src/bin => bin}/functions.sh (100%)
 rename {src/bin => bin}/importSqlFile.js (97%)
 rename {src/bin => bin}/installDeps.sh (82%)
 rename {src/bin => bin}/installOnWindows.bat (94%)
 rename {src/bin => bin}/migrateDirtyDBtoRealDB.js (94%)
 rename {src/bin => bin}/nsis/README.md (100%)
 rename {src/bin => bin}/nsis/brand.ico (100%)
 rename {src/bin => bin}/nsis/etherpad.nsi (100%)
 rename {src/bin => bin}/plugins/README.md (100%)
 rename {src/bin => bin}/plugins/checkPlugin.js (94%)
 rename {src/bin => bin}/plugins/getCorePlugins.sh (97%)
 rename {src/bin => bin}/plugins/lib/CONTRIBUTING.md (100%)
 rename {src/bin => bin}/plugins/lib/LICENSE (100%)
 rename {src/bin => bin}/plugins/lib/README.md (100%)
 rename {src/bin => bin}/plugins/lib/backend-tests.yml (97%)
 rename {src/bin => bin}/plugins/lib/dependabot.yml (100%)
 rename {src/bin => bin}/plugins/lib/eslintrc.cjs (100%)
 rename {src/bin => bin}/plugins/lib/frontend-tests.yml (98%)
 rename {src/bin => bin}/plugins/lib/gitignore (100%)
 rename {src/bin => bin}/plugins/lib/npmpublish.yml (100%)
 rename {src/bin => bin}/plugins/listOfficialPlugins (95%)
 rename {src/bin => bin}/plugins/reTestAllPlugins.sh (84%)
 rename {src/bin => bin}/plugins/stalePlugins.js (100%)
 rename {src/bin => bin}/plugins/updateAllPluginsScript.sh (93%)
 rename {src/bin => bin}/plugins/updateCorePlugins.sh (70%)
 rename {src/bin => bin}/push-after-release.sh (90%)
 rename {src/bin => bin}/rebuildPad.js (89%)
 rename {src/bin => bin}/release.js (97%)
 rename {src/bin => bin}/repairPad.js (87%)
 rename {src/bin => bin}/run.sh (88%)
 rename {src/bin => bin}/safeRun.sh (95%)
 rename {src/bin => bin}/updatePlugins.sh (92%)

diff --git a/.github/workflows/backend-tests.yml b/.github/workflows/backend-tests.yml
index 4f94a727..2ff21138 100644
--- a/.github/workflows/backend-tests.yml
+++ b/.github/workflows/backend-tests.yml
@@ -53,10 +53,10 @@ jobs:
           sudo apt install -y --no-install-recommends libreoffice libreoffice-pdfimport
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Run the backend tests
-        run: cd src && pnpm test
+        run: pnpm test
 
   withpluginsLinux:
     # run on pushes to any branch
@@ -102,10 +102,11 @@ jobs:
           sudo add-apt-repository -y ppa:libreoffice/ppa
           sudo apt update
           sudo apt install -y --no-install-recommends libreoffice libreoffice-pdfimport
+      -
+        name: Install all dependencies and symlink for ep_etherpad-lite
+        run: bin/installDeps.sh
       -
         name: Install Etherpad plugins
-        # The --legacy-peer-deps flag is required to work around a bug in npm v7:
-        # https://github.com/npm/cli/issues/2199
         run: >
           pnpm install --workspace-root
           ep_align
@@ -121,21 +122,9 @@ jobs:
           ep_spellcheck
           ep_subscript_and_superscript
           ep_table_of_contents
-      # Etherpad core dependencies must be installed after installing the
-      # plugin's dependencies, otherwise npm will try to hoist common
-      # dependencies by removing them from src/node_modules and installing them
-      # in the top-level node_modules. As of v6.14.10, npm's hoist logic appears
-      # to be buggy, because it sometimes removes dependencies from
-      # src/node_modules but fails to add them to the top-level node_modules.
-      # Even if npm correctly hoists the dependencies, the hoisting seems to
-      # confuse tools such as `npm outdated`, `npm update`, and some ESLint
-      # rules.
-      -
-        name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
       -
         name: Run the backend tests
-        run: cd src && pnpm test
+        run: pnpm test
 
   withoutpluginsWindows:
     # run on pushes to any branch
@@ -173,7 +162,7 @@ jobs:
         run: pnpm config set auto-install-peers false
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installOnWindows.bat
+        run: bin/installOnWindows.bat
       -
         name:  Fix up the settings.json
         run: |
@@ -248,7 +237,7 @@ jobs:
       # rules.
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installOnWindows.bat
+        run: bin/installOnWindows.bat
       -
         name:  Fix up the settings.json
         run: |
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
index 2edf31ce..7e728ec6 100644
--- a/.github/workflows/docker.yml
+++ b/.github/workflows/docker.yml
@@ -60,7 +60,7 @@ jobs:
         name: Test
         run: |
           docker run --rm -d -p 9001:9001 --name test ${{ env.TEST_TAG }}
-          ./src/bin/installDeps.sh
+          ./bin/installDeps.sh
           docker logs -f test &
           while true; do
             echo "Waiting for Docker container to start..."
diff --git a/.github/workflows/frontend-admin-tests.yml b/.github/workflows/frontend-admin-tests.yml
index 1477ba0b..aa1c4e70 100644
--- a/.github/workflows/frontend-admin-tests.yml
+++ b/.github/workflows/frontend-admin-tests.yml
@@ -67,7 +67,7 @@ jobs:
       # rules.
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Install etherpad plugins
         run: rm -Rf node_modules/ep_align/static/tests/*
diff --git a/.github/workflows/frontend-tests.yml b/.github/workflows/frontend-tests.yml
index c966df81..a5498e1e 100644
--- a/.github/workflows/frontend-tests.yml
+++ b/.github/workflows/frontend-tests.yml
@@ -46,7 +46,7 @@ jobs:
         run: pnpm config set auto-install-peers false
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: export GIT_HASH to env
         id: environment
@@ -142,7 +142,7 @@ jobs:
       # rules.
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: export GIT_HASH to env
         id: environment
diff --git a/.github/workflows/load-test.yml b/.github/workflows/load-test.yml
index 1c47fcca..d4f1a9b4 100644
--- a/.github/workflows/load-test.yml
+++ b/.github/workflows/load-test.yml
@@ -43,7 +43,7 @@ jobs:
         run: pnpm config set auto-install-peers false
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Install etherpad-load-test
         run: sudo npm install -g etherpad-load-test-socket-io
@@ -117,7 +117,7 @@ jobs:
       # rules.
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Run load test
         run: src/tests/frontend/travis/runnerLoadTest.sh 25 50
@@ -158,7 +158,7 @@ jobs:
         run: pnpm config set auto-install-peers false
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Install etherpad-load-test
         run: sudo npm install -g etherpad-load-test-socket-io
diff --git a/.github/workflows/perform-type-check.yml b/.github/workflows/perform-type-check.yml
index 2e928ca2..81be2567 100644
--- a/.github/workflows/perform-type-check.yml
+++ b/.github/workflows/perform-type-check.yml
@@ -41,7 +41,6 @@ jobs:
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
         run: ./bin/installDeps.sh
-        working-directory: ./src
       - name: Perform type check
         working-directory: ./src
         run: npm run ts-check
diff --git a/.github/workflows/rate-limit.yml b/.github/workflows/rate-limit.yml
index 0309b451..dab99fff 100644
--- a/.github/workflows/rate-limit.yml
+++ b/.github/workflows/rate-limit.yml
@@ -57,7 +57,7 @@ jobs:
           docker run --rm --network ep_net --ip 172.23.42.3 --name anotherip -dt anotherip
       -
         name: install dependencies and create symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: run rate limit test
         run: |
diff --git a/.github/workflows/upgrade-from-latest-release.yml b/.github/workflows/upgrade-from-latest-release.yml
index fc1c171f..2a97b8b2 100644
--- a/.github/workflows/upgrade-from-latest-release.yml
+++ b/.github/workflows/upgrade-from-latest-release.yml
@@ -29,30 +29,13 @@ jobs:
         uses: actions/setup-node@v4
         with:
           node-version: ${{ matrix.node }}
-      - uses: pnpm/action-setup@v3
-        name: Install pnpm
-        with:
-          version: 8
-          run_install: false
-      - name: Get pnpm store directory
-        shell: bash
-        run: |
-          echo "STORE_PATH=$(pnpm store path --silent)" >> $GITHUB_ENV
-      - uses: actions/cache@v4
-        name: Setup pnpm cache
-        with:
-          path: ${{ env.STORE_PATH }}
-          key: ${{ runner.os }}-pnpm-store-${{ hashFiles('**/pnpm-lock.yaml') }}
-          restore-keys: |
-            ${{ runner.os }}-pnpm-store-
-      - name: Only install direct dependencies
-        run: pnpm config set auto-install-peers false
       -
         name: Install Etherpad plugins
-        # The --legacy-peer-deps flag is required to work around a bug in npm
-        # v7: https://github.com/npm/cli/issues/2199
+        # Important: Installer for old master which does not have pnpm right now
+        # The --legacy-peer-deps flag is required to work around a bug in npm v7:
+        # https://github.com/npm/cli/issues/2199
         run: >
-          pnpm install --workspace root
+          npm install --no-save --legacy-peer-deps
           ep_align
           ep_author_hover
           ep_cursortrace
@@ -66,21 +49,12 @@ jobs:
           ep_spellcheck
           ep_subscript_and_superscript
           ep_table_of_contents
-      # Etherpad core dependencies must be installed after installing the
-      # plugin's dependencies, otherwise npm will try to hoist common
-      # dependencies by removing them from src/node_modules and installing them
-      # in the top-level node_modules. As of v6.14.10, npm's hoist logic appears
-      # to be buggy, because it sometimes removes dependencies from
-      # src/node_modules but fails to add them to the top-level node_modules.
-      # Even if npm correctly hoists the dependencies, the hoisting seems to
-      # confuse tools such as `npm outdated`, `npm update`, and some ESLint
-      # rules.
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
         run: src/bin/installDeps.sh
       -
         name: Run the backend tests
-        run: cd src && pnpm test
+        run: cd src && npm test
       # Because actions/checkout@v4 is called with "ref: master" and without
       # "fetch-depth: 0", the local clone does not have the ${GITHUB_SHA}
       # commit. Fetch ${GITHUB_REF} to get the ${GITHUB_SHA} commit. Note that a
@@ -96,13 +70,36 @@ jobs:
         # For pull requests, ${GITHUB_SHA} is the automatically generated merge
         # commit that merges the PR's source branch to its destination branch.
         run: git checkout "${GITHUB_SHA}"
+      - uses: pnpm/action-setup@v3
+        name: Install pnpm
+        with:
+          version: 8
+          run_install: false
+      - name: Only install direct dependencies
+        run: pnpm config set auto-install-peers false
+      -
+        name: Install libreoffice
+        run: |
+          sudo add-apt-repository -y ppa:libreoffice/ppa
+          sudo apt update
+          sudo apt install -y --no-install-recommends libreoffice libreoffice-pdfimport
+      - name: Get pnpm store directory
+        shell: bash
+        run: |
+          echo "STORE_PATH=$(pnpm store path --silent)" >> $GITHUB_ENV
+      - uses: actions/cache@v4
+        name: Setup pnpm cache
+        with:
+          path: ${{ env.STORE_PATH }}
+          key: ${{ runner.os }}-pnpm-store-${{ hashFiles('**/pnpm-lock.yaml') }}
+          restore-keys: |
+            ${{ runner.os }}-pnpm-store-
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Run the backend tests
-        working-directory: ./src
-        run: npm test
+        run: pnpm test
       -
         name: Install Cypress
         working-directory: ./src
@@ -111,6 +108,6 @@ jobs:
         name: Run Etherpad & Test Frontend
         working-directory: ./src
         run: |
-          npm run dev &
+          pnpm run dev &
           curl --connect-timeout 10 --max-time 20 --retry 5 --retry-delay 10 --retry-max-time 60 --retry-connrefused http://127.0.0.1:9001/p/test
           ./node_modules/cypress/bin/cypress run --config-file tests/frontend/cypress/cypress.config.js
diff --git a/.github/workflows/windows.yml b/.github/workflows/windows.yml
index acd07836..d95cc68b 100644
--- a/.github/workflows/windows.yml
+++ b/.github/workflows/windows.yml
@@ -50,7 +50,7 @@ jobs:
       -
         name: Install all dependencies and symlink for ep_etherpad-lite
         shell: msys2 {0}
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Run the backend tests
         shell: msys2 {0}
@@ -58,7 +58,7 @@ jobs:
       -
         name: Build the .zip
         shell: msys2 {0}
-        run: src/bin/buildForWindows.sh
+        run: bin/buildForWindows.sh
       -
         name: Archive production artifacts
         uses: actions/upload-artifact@v4
@@ -91,7 +91,7 @@ jobs:
         name: Create installer
         uses: joncloud/makensis-action@v4.1
         with:
-          script-file: 'src/bin/nsis/etherpad.nsi'
+          script-file: 'bin/nsis/etherpad.nsi'
       -
         name: Archive production artifacts
         uses: actions/upload-artifact@v4
@@ -143,7 +143,7 @@ jobs:
         run: pnpm config set auto-install-peers false
       - name: Install all dependencies and symlink for ep_etherpad-lite
         run: .\bin\installOnWindows.bat
-        working-directory: etherpad/src
+        working-directory: etherpad
       -
         name: Run Etherpad
         working-directory: etherpad/src
diff --git a/.gitignore b/.gitignore
index 5364f439..3f6377af 100644
--- a/.gitignore
+++ b/.gitignore
@@ -22,5 +22,4 @@ out/
 /src/bin/convertSettings.json
 /src/bin/etherpad-1.deb
 /src/bin/node.exe
-plugin_packages
-/pnpm-lock.yaml
\ No newline at end of file
+plugin_packages
\ No newline at end of file
diff --git a/.travis.yml b/.travis.yml
index f142e51b..ca8c5380 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -55,7 +55,7 @@ jobs:
         - *set_loglevel_warn
         - *enable_admin_tests
         - "src/tests/frontend/travis/sauce_tunnel.sh"
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - "export GIT_HASH=$(git rev-parse --verify --short HEAD)"
       script:
         - "./src/tests/frontend/travis/runner.sh"
@@ -63,7 +63,7 @@ jobs:
       install:
         - *install_libreoffice
         - *set_loglevel_warn
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - "cd src && pnpm install && cd -"
       script:
         - "cd src && pnpm test"
@@ -77,7 +77,7 @@ jobs:
     - name: "Load test Etherpad without Plugins"
       install:
         - *set_loglevel_warn
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - "cd src && pnpm install && cd -"
         - "npm install -g etherpad-load-test"
       script:
@@ -90,7 +90,7 @@ jobs:
         - *set_loglevel_warn
         - *enable_admin_tests
         - "src/tests/frontend/travis/sauce_tunnel.sh"
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - "rm src/tests/frontend/specs/*"
         - *install_plugins
         - "export GIT_HASH=$(git rev-parse --verify --short HEAD)"
@@ -105,7 +105,7 @@ jobs:
       install:
         - *install_libreoffice
         - *set_loglevel_warn
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - *install_plugins
         - "cd src && pnpm install && cd -"
       script:
@@ -120,7 +120,7 @@ jobs:
     - name: "Load test Etherpad with Plugins"
       install:
         - *set_loglevel_warn
-        - "src/bin/installDeps.sh"
+        - "bin/installDeps.sh"
         - *install_plugins
         - "cd src && npm install && cd -"
         - "npm install -g etherpad-load-test"
@@ -135,7 +135,7 @@ jobs:
         - "docker run -p 8081:80 --rm --network ep_net --ip 172.23.42.1 -d nginx-latest"
         - "docker run --name etherpad-docker -p 9000:9001 --rm --network ep_net --ip 172.23.42.2 -e 'TRUST_PROXY=true' epl-debian-slim &"
         - "docker run --rm --network ep_net --ip 172.23.42.3 --name anotherip -dt anotherip"
-        - "./src/bin/installDeps.sh"
+        - "./bin/installDeps.sh"
       script:
         - "cd src/tests/ratelimit && bash testlimits.sh"
 
diff --git a/Dockerfile b/Dockerfile
index bb000449..a39ce882 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -88,40 +88,25 @@ COPY --chown=etherpad:etherpad ./.git/HEAD ./.git/HEAD
 COPY --chown=etherpad:etherpad ./.git/refs ./.git/refs
 COPY --chown=etherpad:etherpad ${SETTINGS} ./settings.json
 COPY --chown=etherpad:etherpad ./var ./var
-COPY --chown=etherpad:etherpad ./package.json ./package.json
-COPY --chown=etherpad:etherpad ./pnpm-workspace.yaml ./pnpm-workspace.yaml
+COPY --chown=etherpad:etherpad ./bin ./bin
+COPY --chown=etherpad:etherpad ./pnpm-workspace.yaml ./package.json ./
 
 FROM build as development
 
 COPY --chown=etherpad:etherpad ./src/package.json .npmrc ./src/pnpm-lock.yaml ./src/
 
-COPY --chown=etherpad:etherpad ./src/bin ./src/bin
-
-RUN { [ -z "${ETHERPAD_PLUGINS}" ] || \
-      pnpm install --workspace-root ${ETHERPAD_PLUGINS}; } && \
-    src/bin/installDeps.sh
-
+RUN bin/installDeps.sh && { [ -z "${ETHERPAD_PLUGINS}" ] || \
+      pnpm install --workspace-root ${ETHERPAD_PLUGINS}; }
+    
 FROM build as production
 
-# By default, Etherpad container is built and run in "production" mode. This is
-# leaner (development dependencies are not installed) and runs faster (among
-# other things, assets are minified & compressed).
 ENV NODE_ENV=production
 ENV ETHERPAD_PRODUCTION=true
 
 COPY --chown=etherpad:etherpad ./src ./src
 
-# Plugins must be installed before installing Etherpad's dependencies, otherwise
-# npm will try to hoist common dependencies by removing them from
-# src/node_modules and installing them in the top-level node_modules. As of
-# v6.14.10, npm's hoist logic appears to be buggy, because it sometimes removes
-# dependencies from src/node_modules but fails to add them to the top-level
-# node_modules. Even if npm correctly hoists the dependencies, the hoisting
-# seems to confuse tools such as `npm outdated`, `npm update`, and some ESLint
-# rules.
-RUN { [ -z "${ETHERPAD_PLUGINS}" ] || \
+RUN bin/installDeps.sh && { [ -z "${ETHERPAD_PLUGINS}" ] || \
       pnpm install --workspace-root ${ETHERPAD_PLUGINS}; } && \
-    src/bin/installDeps.sh && \
     rm -rf ~/.npm
 
 # Copy the configuration file.
@@ -137,4 +122,4 @@ HEALTHCHECK --interval=5s --timeout=3s \
   CMD curl --silent http://localhost:9001/health | grep -E "pass|ok|up" > /dev/null || exit 1
 
 EXPOSE 9001
-CMD ["npm", "run", "prod", "--prefix", "./src"]
+CMD ["pnpm", "run", "prod"]
diff --git a/bin b/bin
deleted file mode 120000
index 70feaa89..00000000
--- a/bin
+++ /dev/null
@@ -1 +0,0 @@
-src/bin
\ No newline at end of file
diff --git a/src/bin/buildDebian.sh b/bin/buildDebian.sh
similarity index 96%
rename from src/bin/buildDebian.sh
rename to bin/buildDebian.sh
index 241b3f75..f1f5675e 100755
--- a/src/bin/buildDebian.sh
+++ b/bin/buildDebian.sh
@@ -14,7 +14,7 @@ rm -rf ${DIST}
 mkdir -p ${DIST}/
 
 rm -rf ${SRC}
-rsync -a src/bin/deb-src/ ${SRC}/
+rsync -a bin/deb-src/ ${SRC}/
 mkdir -p ${SYSROOT}/opt/
 
 rsync --exclude '.git' -a . ${SYSROOT}/opt/etherpad/ --delete
diff --git a/src/bin/buildForWindows.sh b/bin/buildForWindows.sh
similarity index 98%
rename from src/bin/buildForWindows.sh
rename to bin/buildForWindows.sh
index ffba06eb..e49a3da6 100755
--- a/src/bin/buildForWindows.sh
+++ b/bin/buildForWindows.sh
@@ -47,7 +47,7 @@ rm -rf node_modules || true
 rm -rf src/node_modules || true
 
 #log "do a normal unix install first..."
-#$(try cd src && ./bin/installDeps.sh)
+#$(try cd ./bin/installDeps.sh)
 
 log "copy the windows settings template..."
 try cp settings.json.template settings.json
diff --git a/src/bin/checkAllPads.js b/bin/checkAllPads.js
similarity index 79%
rename from src/bin/checkAllPads.js
rename to bin/checkAllPads.js
index d2a5f837..69514f35 100644
--- a/src/bin/checkAllPads.js
+++ b/bin/checkAllPads.js
@@ -7,12 +7,12 @@
 // unhandled rejection into an uncaught exception, which does cause Node.js to exit.
 process.on('unhandledRejection', (err) => { throw err; });
 
-if (process.argv.length !== 2) throw new Error('Use: node src/bin/checkAllPads.js');
+if (process.argv.length !== 2) throw new Error('Use: node bin/checkAllPads.js');
 
 (async () => {
-  const db = require('../node/db/DB');
+  const db = require('./src/node/db/DB');
   await db.init();
-  const padManager = require('../node/db/PadManager');
+  const padManager = require('./src/node/db/PadManager');
   await Promise.all((await padManager.listAllPads()).padIDs.map(async (padId) => {
     const pad = await padManager.getPad(padId);
     try {
diff --git a/src/bin/checkPad.js b/bin/checkPad.js
similarity index 75%
rename from src/bin/checkPad.js
rename to bin/checkPad.js
index 6aa4b303..10448637 100644
--- a/src/bin/checkPad.js
+++ b/bin/checkPad.js
@@ -7,12 +7,12 @@
 // unhandled rejection into an uncaught exception, which does cause Node.js to exit.
 process.on('unhandledRejection', (err) => { throw err; });
 
-if (process.argv.length !== 3) throw new Error('Use: node src/bin/checkPad.js $PADID');
+if (process.argv.length !== 3) throw new Error('Use: node bin/checkPad.js $PADID');
 const padId = process.argv[2];
 (async () => {
-  const db = require('../node/db/DB');
+  const db = require('./src/node/db/DB');
   await db.init();
-  const padManager = require('../node/db/PadManager');
+  const padManager = require('./src/node/db/PadManager');
   if (!await padManager.doesPadExists(padId)) throw new Error('Pad does not exist');
   const pad = await padManager.getPad(padId);
   await pad.check();
diff --git a/src/bin/cleanRun.sh b/bin/cleanRun.sh
similarity index 89%
rename from src/bin/cleanRun.sh
rename to bin/cleanRun.sh
index adac8c66..acff0d66 100755
--- a/src/bin/cleanRun.sh
+++ b/bin/cleanRun.sh
@@ -2,10 +2,10 @@
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Source constants and useful functions
-. src/bin/functions.sh
+. bin/functions.sh
 
 ignoreRoot=0
 for ARG in "$@"
@@ -31,7 +31,7 @@ fi
 rm -rf src/node_modules
 
 #Prepare the environment
-src/bin/installDeps.sh "$@" || exit 1
+bin/installDeps.sh "$@" || exit 1
 
 #Move to the node folder and start
 echo "Starting Etherpad..."
diff --git a/src/bin/convertSettings.json.template b/bin/convertSettings.json.template
similarity index 100%
rename from src/bin/convertSettings.json.template
rename to bin/convertSettings.json.template
diff --git a/src/bin/createRelease.sh b/bin/createRelease.sh
similarity index 99%
rename from src/bin/createRelease.sh
rename to bin/createRelease.sh
index 14e3cd33..e3b0eb0d 100755
--- a/src/bin/createRelease.sh
+++ b/bin/createRelease.sh
@@ -134,7 +134,7 @@ function create_builds {
   git clone $ETHER_WEB_REPO
   echo "Creating windows build..."
   cd etherpad-lite
-  src/bin/buildForWindows.sh
+  bin/buildForWindows.sh
   [[ $? != 0 ]] && echo "Aborting: Error creating build for windows" && exit 1
   echo "Creating docs..."
   make docs
diff --git a/src/bin/createUserSession.js b/bin/createUserSession.js
similarity index 94%
rename from src/bin/createUserSession.js
rename to bin/createUserSession.js
index 33dcac18..58ab1bba 100644
--- a/src/bin/createUserSession.js
+++ b/bin/createUserSession.js
@@ -12,13 +12,13 @@ process.on('unhandledRejection', (err) => { throw err; });
 const fs = require('fs');
 const path = require('path');
 const querystring = require('querystring');
-const settings = require('../node/utils/Settings');
+const settings = require('./src/node/utils/Settings');
 const supertest = require('supertest');
 
 (async () => {
   const api = supertest(`http://${settings.ip}:${settings.port}`);
 
-  const filePath = path.join(__dirname, '../../APIKEY.txt');
+  const filePath = path.join(__dirname, '../APIKEY.txt');
   const apikey = fs.readFileSync(filePath, {encoding: 'utf-8'});
 
   let res;
diff --git a/src/bin/deb-src/DEBIAN/control b/bin/deb-src/DEBIAN/control
similarity index 100%
rename from src/bin/deb-src/DEBIAN/control
rename to bin/deb-src/DEBIAN/control
diff --git a/src/bin/deb-src/DEBIAN/postinst b/bin/deb-src/DEBIAN/postinst
similarity index 100%
rename from src/bin/deb-src/DEBIAN/postinst
rename to bin/deb-src/DEBIAN/postinst
diff --git a/src/bin/deb-src/DEBIAN/preinst b/bin/deb-src/DEBIAN/preinst
similarity index 100%
rename from src/bin/deb-src/DEBIAN/preinst
rename to bin/deb-src/DEBIAN/preinst
diff --git a/src/bin/deb-src/DEBIAN/prerm b/bin/deb-src/DEBIAN/prerm
similarity index 100%
rename from src/bin/deb-src/DEBIAN/prerm
rename to bin/deb-src/DEBIAN/prerm
diff --git a/src/bin/deb-src/sysroot/etc/init/etherpad.conf b/bin/deb-src/sysroot/etc/init/etherpad.conf
similarity index 90%
rename from src/bin/deb-src/sysroot/etc/init/etherpad.conf
rename to bin/deb-src/sysroot/etc/init/etherpad.conf
index 9a2fcf42..ea8349d1 100644
--- a/src/bin/deb-src/sysroot/etc/init/etherpad.conf
+++ b/bin/deb-src/sysroot/etc/init/etherpad.conf
@@ -15,7 +15,7 @@ pre-start script
     chown $EPUSER $EPLOGS                ||true
     chmod 0755 $EPLOGS                   ||true
     chown -R $EPUSER $EPHOME/var         ||true
-    $EPHOME/src/bin/installDeps.sh >> $EPLOGS/error.log || { stop; exit 1; }
+    $EPHOME/bin/installDeps.sh >> $EPLOGS/error.log || { stop; exit 1; }
 end script
 
 script
diff --git a/src/bin/debugRun.sh b/bin/debugRun.sh
similarity index 87%
rename from src/bin/debugRun.sh
rename to bin/debugRun.sh
index 1336e295..2bfe969c 100755
--- a/src/bin/debugRun.sh
+++ b/bin/debugRun.sh
@@ -2,13 +2,13 @@
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Source constants and useful functions
-. src/bin/functions.sh
+. bin/functions.sh
 
 # Prepare the environment
-src/bin/installDeps.sh || exit 1
+bin/installDeps.sh || exit 1
 
 echo "If you are new to debugging Node.js with Chrome DevTools, take a look at this page:"
 echo "https://medium.com/@paul_irish/debugging-node-js-nightlies-with-chrome-devtools-7c4a1b95ae27"
diff --git a/src/bin/deleteAllGroupSessions.js b/bin/deleteAllGroupSessions.js
similarity index 92%
rename from src/bin/deleteAllGroupSessions.js
rename to bin/deleteAllGroupSessions.js
index c95bf107..4b619265 100644
--- a/src/bin/deleteAllGroupSessions.js
+++ b/bin/deleteAllGroupSessions.js
@@ -18,11 +18,11 @@ const supertest = require('supertest');
 let deleteCount = 0;
 
 // get the API Key
-const filePath = path.join(__dirname, '../../APIKEY.txt');
+const filePath = path.join(__dirname, '../APIKEY.txt');
 console.log('Deleting all group sessions, please be patient.');
 
 (async () => {
-  const settings = require('../tests/container/loadSettings').loadSettings();
+  const settings = require('./src/tests/container/loadSettings').loadSettings();
   const apikey = fs.readFileSync(filePath, {encoding: 'utf-8'});
   const api = supertest(`http://${settings.ip}:${settings.port}`);
 
diff --git a/src/bin/deletePad.js b/bin/deletePad.js
similarity index 90%
rename from src/bin/deletePad.js
rename to bin/deletePad.js
index 51ea9963..7823cbd8 100644
--- a/src/bin/deletePad.js
+++ b/bin/deletePad.js
@@ -9,7 +9,7 @@
 // unhandled rejection into an uncaught exception, which does cause Node.js to exit.
 process.on('unhandledRejection', (err) => { throw err; });
 
-const settings = require('../tests/container/loadSettings').loadSettings();
+const settings = require('./src/tests/container/loadSettings').loadSettings();
 const path = require('path');
 const fs = require('fs');
 const supertest = require('supertest');
@@ -22,7 +22,7 @@ if (process.argv.length !== 3) throw new Error('Use: node deletePad.js $PADID');
 const padId = process.argv[2];
 
 // get the API Key
-const filePath = path.join(__dirname, '../../APIKEY.txt');
+const filePath = path.join(__dirname, '../APIKEY.txt');
 const apikey = fs.readFileSync(filePath, {encoding: 'utf-8'});
 
 (async () => {
diff --git a/src/bin/doc/LICENSE b/bin/doc/LICENSE
similarity index 100%
rename from src/bin/doc/LICENSE
rename to bin/doc/LICENSE
diff --git a/src/bin/doc/README.md b/bin/doc/README.md
similarity index 100%
rename from src/bin/doc/README.md
rename to bin/doc/README.md
diff --git a/src/bin/doc/generate.js b/bin/doc/generate.js
similarity index 100%
rename from src/bin/doc/generate.js
rename to bin/doc/generate.js
diff --git a/src/bin/doc/html.js b/bin/doc/html.js
similarity index 100%
rename from src/bin/doc/html.js
rename to bin/doc/html.js
diff --git a/src/bin/doc/json.js b/bin/doc/json.js
similarity index 100%
rename from src/bin/doc/json.js
rename to bin/doc/json.js
diff --git a/src/bin/etherpad-healthcheck b/bin/etherpad-healthcheck
similarity index 100%
rename from src/bin/etherpad-healthcheck
rename to bin/etherpad-healthcheck
diff --git a/src/bin/extractPadData.js b/bin/extractPadData.js
similarity index 92%
rename from src/bin/extractPadData.js
rename to bin/extractPadData.js
index b0d0212d..51c3abcd 100644
--- a/src/bin/extractPadData.js
+++ b/bin/extractPadData.js
@@ -19,13 +19,13 @@ const padId = process.argv[2];
 
 (async () => {
   // initialize database
-  require('../node/utils/Settings');
-  const db = require('../node/db/DB');
+  require('./src/node/utils/Settings');
+  const db = require('./src/node/db/DB');
   await db.init();
 
   // load extra modules
   const dirtyDB = require('dirty');
-  const padManager = require('../node/db/PadManager');
+  const padManager = require('./src/node/db/PadManager');
 
   // initialize output database
   const dirty = dirtyDB(`${padId}.db`);
diff --git a/src/bin/fastRun.sh b/bin/fastRun.sh
similarity index 91%
rename from src/bin/fastRun.sh
rename to bin/fastRun.sh
index 6b499617..b18469ed 100755
--- a/src/bin/fastRun.sh
+++ b/bin/fastRun.sh
@@ -11,10 +11,10 @@ set -eu
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Source constants and useful functions
-. src/bin/functions.sh
+. bin/functions.sh
 
 echo "Running directly, without checking/installing dependencies"
 
diff --git a/src/bin/functions.sh b/bin/functions.sh
similarity index 100%
rename from src/bin/functions.sh
rename to bin/functions.sh
diff --git a/src/bin/importSqlFile.js b/bin/importSqlFile.js
similarity index 97%
rename from src/bin/importSqlFile.js
rename to bin/importSqlFile.js
index 148503e8..145e19bf 100644
--- a/src/bin/importSqlFile.js
+++ b/bin/importSqlFile.js
@@ -49,7 +49,7 @@ const unescape = (val) => {
   const fs = require('fs');
   const log4js = require('log4js');
   const readline = require('readline');
-  const settings = require('../node/utils/Settings');
+  const settings = require('./src/node/utils/Settings');
   const ueberDB = require('ueberdb2');
 
   const dbWrapperSettings = {
diff --git a/src/bin/installDeps.sh b/bin/installDeps.sh
similarity index 82%
rename from src/bin/installDeps.sh
rename to bin/installDeps.sh
index 722dec0d..af2b5e30 100755
--- a/src/bin/installDeps.sh
+++ b/bin/installDeps.sh
@@ -3,10 +3,10 @@
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Source constants and useful functions
-. src/bin/functions.sh
+. bin/functions.sh
 
 is_cmd pnpm || npm install pnpm -g
 
@@ -33,16 +33,13 @@ if [ ! -f "$settings" ]; then
   cp settings.json.template "$settings" || exit 1
 fi
 
-
 log "Installing dependencies..."
-cd src
-
 if [ -z "${ETHERPAD_PRODUCTION}" ]; then
-  log "Installing dev dependencies"
- pnpm i  || exit 1
+  log "Installing dev dependencies with pnpm"
+  pnpm --recursive i  || exit 1
 else
-  log "Installing production dependencies"
-  pnpm i  --production || exit 1
+  log "Installing production dependencies with pnpm"
+  pnpm --recursive i --production || exit 1
 fi
 
 # Remove all minified data to force node creating it new
diff --git a/src/bin/installOnWindows.bat b/bin/installOnWindows.bat
similarity index 94%
rename from src/bin/installOnWindows.bat
rename to bin/installOnWindows.bat
index 56bd4c7d..bf8e6a32 100644
--- a/src/bin/installOnWindows.bat
+++ b/bin/installOnWindows.bat
@@ -1,7 +1,7 @@
 @echo off
 
 :: Change directory to etherpad-lite root
-cd /D "%~dp0\..\.."
+cd /D "%~dp0\.."
 
 :: Is node installed?
 cmd /C node -e "" || ( echo "Please install node.js ( https://nodejs.org )" && exit /B 1 )
@@ -16,7 +16,7 @@ mklink /D "ep_etherpad-lite" "..\src"
 cd /D ..\src
 cmd /C pnpm i || exit /B 1
 
-cd /D "%~dp0\..\.."
+cd /D "%~dp0\.."
 
 echo _
 echo Clearing cache...
diff --git a/src/bin/migrateDirtyDBtoRealDB.js b/bin/migrateDirtyDBtoRealDB.js
similarity index 94%
rename from src/bin/migrateDirtyDBtoRealDB.js
rename to bin/migrateDirtyDBtoRealDB.js
index 75f6cc67..37a95212 100644
--- a/src/bin/migrateDirtyDBtoRealDB.js
+++ b/bin/migrateDirtyDBtoRealDB.js
@@ -14,7 +14,7 @@ process.on('unhandledRejection', (err) => { throw err; });
 
   const dirtyDb = require('dirty');
   const log4js = require('log4js');
-  const settings = require('../node/utils/Settings');
+  const settings = require('./src/node/utils/Settings');
   const ueberDB = require('ueberdb2');
   const util = require('util');
 
@@ -30,7 +30,7 @@ process.on('unhandledRejection', (err) => { throw err; });
   await db.init();
 
   console.log('Waiting for dirtyDB to parse its file.');
-  const dirty = dirtyDb(`${__dirname}/../../var/dirty.db`);
+  const dirty = dirtyDb(`${__dirname}/../var/dirty.db`);
   const length = await new Promise((resolve) => { dirty.once('load', resolve); });
 
   console.log(`Found ${length} records, processing now.`);
diff --git a/src/bin/nsis/README.md b/bin/nsis/README.md
similarity index 100%
rename from src/bin/nsis/README.md
rename to bin/nsis/README.md
diff --git a/src/bin/nsis/brand.ico b/bin/nsis/brand.ico
similarity index 100%
rename from src/bin/nsis/brand.ico
rename to bin/nsis/brand.ico
diff --git a/src/bin/nsis/etherpad.nsi b/bin/nsis/etherpad.nsi
similarity index 100%
rename from src/bin/nsis/etherpad.nsi
rename to bin/nsis/etherpad.nsi
diff --git a/src/bin/plugins/README.md b/bin/plugins/README.md
similarity index 100%
rename from src/bin/plugins/README.md
rename to bin/plugins/README.md
diff --git a/src/bin/plugins/checkPlugin.js b/bin/plugins/checkPlugin.js
similarity index 94%
rename from src/bin/plugins/checkPlugin.js
rename to bin/plugins/checkPlugin.js
index 8f557c3c..132097ef 100755
--- a/src/bin/plugins/checkPlugin.js
+++ b/bin/plugins/checkPlugin.js
@@ -3,11 +3,11 @@
 /*
  * Usage -- see README.md
  *
- * Normal usage:                node src/bin/plugins/checkPlugin.js ep_whatever
- * Auto fix the things it can:  node src/bin/plugins/checkPlugin.js ep_whatever autofix
- * Auto fix and commit:         node src/bin/plugins/checkPlugin.js ep_whatever autocommit
+ * Normal usage:                node bin/plugins/checkPlugin.js ep_whatever
+ * Auto fix the things it can:  node bin/plugins/checkPlugin.js ep_whatever autofix
+ * Auto fix and commit:         node bin/plugins/checkPlugin.js ep_whatever autocommit
  * Auto fix, commit, push and publish to npm (highly dangerous):
- *                              node src/bin/plugins/checkPlugin.js ep_whatever autopush
+ *                              node bin/plugins/checkPlugin.js ep_whatever autopush
  */
 
 const process = require('process');
@@ -32,7 +32,7 @@ const logger = log4js.getLogger('checkPlugin');
   if (!pluginName) throw new Error('no plugin name specified');
   logger.info(`Checking the plugin: ${pluginName}`);
 
-  const epRootDir = await fsp.realpath(path.join(await fsp.realpath(__dirname), '../../..'));
+  const epRootDir = await fsp.realpath(path.join(await fsp.realpath(__dirname), '../..'));
   logger.info(`Etherpad root directory: ${epRootDir}`);
   process.chdir(epRootDir);
   const pluginPath = await fsp.realpath(`node_modules/${pluginName}`);
@@ -159,9 +159,9 @@ const logger = log4js.getLogger('checkPlugin');
 
   const workflows = ['backend-tests.yml', 'frontend-tests.yml', 'npmpublish.yml'];
   await Promise.all(workflows.map(async (fn) => {
-    await checkFile(`src/bin/plugins/lib/${fn}`, `.github/workflows/${fn}`);
+    await checkFile(`bin/plugins/lib/${fn}`, `.github/workflows/${fn}`);
   }));
-  await checkFile('src/bin/plugins/lib/dependabot.yml', '.github/dependabot.yml');
+  await checkFile('bin/plugins/lib/dependabot.yml', '.github/dependabot.yml');
 
   if (!files.includes('package.json')) {
     logger.warn('no package.json, please create');
@@ -214,7 +214,7 @@ const logger = log4js.getLogger('checkPlugin');
         logger.error(`both ${from} and ${to} exist; delete ${from}`);
       }
     } else {
-      checkFile('src/bin/plugins/lib/eslintrc.cjs', '.eslintrc.cjs', false);
+      checkFile('bin/plugins/lib/eslintrc.cjs', '.eslintrc.cjs', false);
     }
 
     if (checkEntries(parsedPackageJSON, {
@@ -251,7 +251,7 @@ const logger = log4js.getLogger('checkPlugin');
     if (autoFix) {
       logger.info('Autofixing missing README.md file');
       logger.info('please edit the README.md file further to include plugin specific details.');
-      await fillTemplate('src/bin/plugins/lib/README.md', `${pluginPath}/README.md`);
+      await fillTemplate('bin/plugins/lib/README.md', `${pluginPath}/README.md`);
     }
   }
 
@@ -260,7 +260,7 @@ const logger = log4js.getLogger('checkPlugin');
     if (autoFix) {
       logger.info('Autofixing missing CONTRIBUTING.md file, please edit the CONTRIBUTING.md ' +
                   'file further to include plugin specific details.');
-      await fillTemplate('src/bin/plugins/lib/CONTRIBUTING.md', `${pluginPath}/CONTRIBUTING.md`);
+      await fillTemplate('bin/plugins/lib/CONTRIBUTING.md', `${pluginPath}/CONTRIBUTING.md`);
     }
   }
 
@@ -296,7 +296,7 @@ const logger = log4js.getLogger('checkPlugin');
     logger.warn('LICENSE file not found, please create');
     if (autoFix) {
       logger.info('Autofixing missing LICENSE file (Apache 2.0).');
-      await fsp.copyFile('src/bin/plugins/lib/LICENSE', `${pluginPath}/LICENSE`);
+      await fsp.copyFile('bin/plugins/lib/LICENSE', `${pluginPath}/LICENSE`);
     }
   }
 
@@ -306,7 +306,7 @@ const logger = log4js.getLogger('checkPlugin');
     if (autoFix) {
       logger.info('Autofixing missing .gitignore file');
       const gitignore =
-          await fsp.readFile('src/bin/plugins/lib/gitignore', {encoding: 'utf8', flag: 'r'});
+          await fsp.readFile('bin/plugins/lib/gitignore', {encoding: 'utf8', flag: 'r'});
       await fsp.writeFile(`${pluginPath}/.gitignore`, gitignore);
     }
   } else {
diff --git a/src/bin/plugins/getCorePlugins.sh b/bin/plugins/getCorePlugins.sh
similarity index 97%
rename from src/bin/plugins/getCorePlugins.sh
rename to bin/plugins/getCorePlugins.sh
index 85552ab1..db0599e1 100755
--- a/src/bin/plugins/getCorePlugins.sh
+++ b/bin/plugins/getCorePlugins.sh
@@ -11,7 +11,7 @@ error () { log "ERROR: $@" >&2; }
 fatal () { error "$@"; exit 1; }
 
 mydir=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${mydir}/../../.."
+cd "${mydir}/../.."
 pdir=$(cd .. && pwd -P) || exit 1
 
 plugins=$("${mydir}/listOfficialPlugins") || exit 1
diff --git a/src/bin/plugins/lib/CONTRIBUTING.md b/bin/plugins/lib/CONTRIBUTING.md
similarity index 100%
rename from src/bin/plugins/lib/CONTRIBUTING.md
rename to bin/plugins/lib/CONTRIBUTING.md
diff --git a/src/bin/plugins/lib/LICENSE b/bin/plugins/lib/LICENSE
similarity index 100%
rename from src/bin/plugins/lib/LICENSE
rename to bin/plugins/lib/LICENSE
diff --git a/src/bin/plugins/lib/README.md b/bin/plugins/lib/README.md
similarity index 100%
rename from src/bin/plugins/lib/README.md
rename to bin/plugins/lib/README.md
diff --git a/src/bin/plugins/lib/backend-tests.yml b/bin/plugins/lib/backend-tests.yml
similarity index 97%
rename from src/bin/plugins/lib/backend-tests.yml
rename to bin/plugins/lib/backend-tests.yml
index 184eb26f..e8304ea0 100644
--- a/src/bin/plugins/lib/backend-tests.yml
+++ b/bin/plugins/lib/backend-tests.yml
@@ -49,7 +49,7 @@ jobs:
           cache: 'npm'
           cache-dependency-path: |
             src/package-lock.json
-            src/bin/doc/package-lock.json
+            bin/doc/package-lock.json
             node_modules/${{ steps.plugin_name.outputs.plugin_name }}/package-lock.json
       -
         name: Install plugin dependencies
@@ -69,7 +69,7 @@ jobs:
       # rules.
       -
         name: Install Etherpad core dependencies
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Run the backend tests
         run: cd src && pnpm test
diff --git a/src/bin/plugins/lib/dependabot.yml b/bin/plugins/lib/dependabot.yml
similarity index 100%
rename from src/bin/plugins/lib/dependabot.yml
rename to bin/plugins/lib/dependabot.yml
diff --git a/src/bin/plugins/lib/eslintrc.cjs b/bin/plugins/lib/eslintrc.cjs
similarity index 100%
rename from src/bin/plugins/lib/eslintrc.cjs
rename to bin/plugins/lib/eslintrc.cjs
diff --git a/src/bin/plugins/lib/frontend-tests.yml b/bin/plugins/lib/frontend-tests.yml
similarity index 98%
rename from src/bin/plugins/lib/frontend-tests.yml
rename to bin/plugins/lib/frontend-tests.yml
index 8491ec3d..f4c6d34a 100644
--- a/src/bin/plugins/lib/frontend-tests.yml
+++ b/bin/plugins/lib/frontend-tests.yml
@@ -38,7 +38,7 @@ jobs:
           cache: 'npm'
           cache-dependency-path: |
             src/package-lock.json
-            src/bin/doc/package-lock.json
+            bin/doc/package-lock.json
       -
         name: Check out the plugin
         uses: actions/checkout@v3
@@ -80,7 +80,7 @@ jobs:
       # rules.
       -
         name: Install Etherpad core dependencies
-        run: src/bin/installDeps.sh
+        run: bin/installDeps.sh
       -
         name: Create settings.json
         run: cp settings.json.template settings.json
diff --git a/src/bin/plugins/lib/gitignore b/bin/plugins/lib/gitignore
similarity index 100%
rename from src/bin/plugins/lib/gitignore
rename to bin/plugins/lib/gitignore
diff --git a/src/bin/plugins/lib/npmpublish.yml b/bin/plugins/lib/npmpublish.yml
similarity index 100%
rename from src/bin/plugins/lib/npmpublish.yml
rename to bin/plugins/lib/npmpublish.yml
diff --git a/src/bin/plugins/listOfficialPlugins b/bin/plugins/listOfficialPlugins
similarity index 95%
rename from src/bin/plugins/listOfficialPlugins
rename to bin/plugins/listOfficialPlugins
index 322ad5d3..61cd8b0c 100755
--- a/src/bin/plugins/listOfficialPlugins
+++ b/bin/plugins/listOfficialPlugins
@@ -3,7 +3,7 @@ set -e
 newline='
 '
 mydir=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${mydir}/../../.."
+cd "${mydir}/../.."
 pdir=$(cd .. && pwd -P) || exit 1
 plugins=
 for p in "" "&page=2" "&page=3"; do
diff --git a/src/bin/plugins/reTestAllPlugins.sh b/bin/plugins/reTestAllPlugins.sh
similarity index 84%
rename from src/bin/plugins/reTestAllPlugins.sh
rename to bin/plugins/reTestAllPlugins.sh
index abe1bca8..ccabd1bc 100755
--- a/src/bin/plugins/reTestAllPlugins.sh
+++ b/bin/plugins/reTestAllPlugins.sh
@@ -4,7 +4,7 @@ do
   echo $dir
   if [[ $dir == *"ep_"* ]]; then
     if [[ $dir != "ep_etherpad-lite" ]]; then
-      # node src/bin/plugins/checkPlugin.js $dir autopush
+      # node bin/plugins/checkPlugin.js $dir autopush
       cd node_modules/$dir
       git commit -m "Automatic update: bump update to re-run latest Etherpad tests" --allow-empty
       git push origin master
diff --git a/src/bin/plugins/stalePlugins.js b/bin/plugins/stalePlugins.js
similarity index 100%
rename from src/bin/plugins/stalePlugins.js
rename to bin/plugins/stalePlugins.js
diff --git a/src/bin/plugins/updateAllPluginsScript.sh b/bin/plugins/updateAllPluginsScript.sh
similarity index 93%
rename from src/bin/plugins/updateAllPluginsScript.sh
rename to bin/plugins/updateAllPluginsScript.sh
index 79be4bc4..3ee0118b 100755
--- a/src/bin/plugins/updateAllPluginsScript.sh
+++ b/bin/plugins/updateAllPluginsScript.sh
@@ -10,7 +10,7 @@ do
   # echo $0
   if [[ $dir == *"ep_"* ]]; then
     if [[ $dir != "ep_etherpad-lite" ]]; then
-      node src/bin/plugins/checkPlugin.js $dir autopush
+      node bin/plugins/checkPlugin.js $dir autopush
     fi
   fi
   # echo $dir
diff --git a/src/bin/plugins/updateCorePlugins.sh b/bin/plugins/updateCorePlugins.sh
similarity index 70%
rename from src/bin/plugins/updateCorePlugins.sh
rename to bin/plugins/updateCorePlugins.sh
index 3866b844..51ef7724 100755
--- a/src/bin/plugins/updateCorePlugins.sh
+++ b/bin/plugins/updateCorePlugins.sh
@@ -5,5 +5,5 @@ set -e
 for dir in node_modules/ep_*; do
   dir=${dir#node_modules/}
   [ "$dir" != ep_etherpad-lite ] || continue
-  node src/bin/plugins/checkPlugin.js "$dir" autopush
+  node bin/plugins/checkPlugin.js "$dir" autopush
 done
diff --git a/src/bin/push-after-release.sh b/bin/push-after-release.sh
similarity index 90%
rename from src/bin/push-after-release.sh
rename to bin/push-after-release.sh
index 8781196f..b426f630 100755
--- a/src/bin/push-after-release.sh
+++ b/bin/push-after-release.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 # Specify the path to your package.json file
-PACKAGE_JSON_PATH="./src//package.json"
+PACKAGE_JSON_PATH="./src/package.json"
 
 # Check if the file exists
 if [ ! -f "$PACKAGE_JSON_PATH" ]; then
diff --git a/src/bin/rebuildPad.js b/bin/rebuildPad.js
similarity index 89%
rename from src/bin/rebuildPad.js
rename to bin/rebuildPad.js
index 73f53088..52194c9a 100644
--- a/src/bin/rebuildPad.js
+++ b/bin/rebuildPad.js
@@ -10,7 +10,7 @@
 process.on('unhandledRejection', (err) => { throw err; });
 
 if (process.argv.length !== 4 && process.argv.length !== 5) {
-  throw new Error('Use: node src/bin/repairPad.js $PADID $REV [$NEWPADID]');
+  throw new Error('Use: node bin/repairPad.js $PADID $REV [$NEWPADID]');
 }
 
 const padId = process.argv[2];
@@ -18,11 +18,11 @@ const newRevHead = process.argv[3];
 const newPadId = process.argv[4] || `${padId}-rebuilt`;
 
 (async () => {
-  const db = require('../node/db/DB');
+  const db = require('./src/node/db/DB');
   await db.init();
 
-  const PadManager = require('../node/db/PadManager');
-  const Pad = require('../node/db/Pad').Pad;
+  const PadManager = require('./src/node/db/PadManager');
+  const Pad = require('./src/node/db/Pad').Pad;
   // Validate the newPadId if specified and that a pad with that ID does
   // not already exist to avoid overwriting it.
   if (!PadManager.isValidPadId(newPadId)) {
@@ -43,8 +43,8 @@ const newPadId = process.argv[4] || `${padId}-rebuilt`;
   }));
 
   // Rebuild Pad from revisions up to and including the new revision head
-  const AuthorManager = require('../node/db/AuthorManager');
-  const Changeset = require('../static/js/Changeset');
+  const AuthorManager = require('./src/node/db/AuthorManager');
+  const Changeset = require('./src/static/js/Changeset');
   // Author attributes are derived from changesets, but there can also be
   // non-author attributes with specific mappings that changesets depend on
   // and, AFAICT, cannot be recreated any other way
diff --git a/src/bin/release.js b/bin/release.js
similarity index 97%
rename from src/bin/release.js
rename to bin/release.js
index ee5f245e..47a74a41 100644
--- a/src/bin/release.js
+++ b/bin/release.js
@@ -20,11 +20,11 @@ log4js.configure({appenders: {console: {type: 'console'}},
 
 Usage
 
-node src/bin/release.js patch
+node bin/release.js patch
 
 */
 const usage =
-    'node src/bin/release.js [patch/minor/major] -- example: "node src/bin/release.js patch"';
+    'node bin/release.js [patch/minor/major] -- example: "node bin/release.js patch"';
 
 const release = process.argv[2];
 
@@ -33,7 +33,7 @@ if (!release) {
   throw new Error('No release type included');
 }
 
-const cwd = path.join(fs.realpathSync(__dirname), '../../');
+const cwd = path.join(fs.realpathSync(__dirname), '../');
 process.chdir(cwd);
 
 // Run command capturing stdout. Trailing newlines are stripped (like the shell does).
diff --git a/src/bin/repairPad.js b/bin/repairPad.js
similarity index 87%
rename from src/bin/repairPad.js
rename to bin/repairPad.js
index ed1d8365..bf346c8e 100644
--- a/src/bin/repairPad.js
+++ b/bin/repairPad.js
@@ -10,7 +10,7 @@ process.on('unhandledRejection', (err) => { throw err; });
 
 console.warn('WARNING: This script must not be used while etherpad is running!');
 
-if (process.argv.length !== 3) throw new Error('Use: node src/bin/repairPad.js $PADID');
+if (process.argv.length !== 3) throw new Error('Use: node ./src/bin/repairPad.js $PADID');
 
 // get the padID
 const padId = process.argv[2];
@@ -19,12 +19,12 @@ let valueCount = 0;
 
 (async () => {
   // initialize database
-  require('../node/utils/Settings');
-  const db = require('../node/db/DB');
+  require('./src/node/utils/Settings');
+  const db = require('./src/node/db/DB');
   await db.init();
 
   // get the pad
-  const padManager = require('../node/db/PadManager');
+  const padManager = require('./src/node/db/PadManager');
   const pad = await padManager.getPad(padId);
 
   // accumulate the required keys
diff --git a/src/bin/run.sh b/bin/run.sh
similarity index 88%
rename from src/bin/run.sh
rename to bin/run.sh
index 0f11a123..4f0b8f83 100755
--- a/src/bin/run.sh
+++ b/bin/run.sh
@@ -2,10 +2,10 @@
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Source constants and useful functions
-. src/bin/functions.sh
+. bin/functions.sh
 
 ignoreRoot=0
 for ARG in "$@"; do
@@ -27,9 +27,10 @@ EOF
 fi
 
 # Prepare the environment
-src/bin/installDeps.sh "$@" || exit 1
+bin/installDeps.sh "$@" || exit 1
 
 # Move to the node folder and start
 log "Starting Etherpad..."
 
+# cd src
 exec pnpm run dev "$@"
diff --git a/src/bin/safeRun.sh b/bin/safeRun.sh
similarity index 95%
rename from src/bin/safeRun.sh
rename to bin/safeRun.sh
index d980b930..72ac475b 100755
--- a/src/bin/safeRun.sh
+++ b/bin/safeRun.sh
@@ -25,7 +25,7 @@ LAST_EMAIL_SEND=0
 
 # Move to the Etherpad base directory.
 MY_DIR=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${MY_DIR}/../.." || exit 1
+cd "${MY_DIR}/.." || exit 1
 
 # Check if a logfile parameter is set
 LOG="$1"
@@ -40,7 +40,7 @@ while true; do
   [ -w "${LOG}" ] || fatal "Logfile '${LOG}' is not writeable"
 
   # Start the application
-  src/bin/run.sh "$@" >>${LOG} 2>>${LOG}
+  bin/run.sh "$@" >>${LOG} 2>>${LOG}
 
   TIME_FMT=$(date +%Y-%m-%dT%H:%M:%S%z)
 
diff --git a/src/bin/updatePlugins.sh b/bin/updatePlugins.sh
similarity index 92%
rename from src/bin/updatePlugins.sh
rename to bin/updatePlugins.sh
index 586ba162..55879e6b 100755
--- a/src/bin/updatePlugins.sh
+++ b/bin/updatePlugins.sh
@@ -1,7 +1,7 @@
 #!/bin/sh
 set -e
 mydir=$(cd "${0%/*}" && pwd -P) || exit 1
-cd "${mydir}"/../..
+cd "${mydir}"/..
 OUTDATED=$(npm outdated --depth=0 | awk '{print $1}' | grep '^ep_') || {
   echo "All plugins are up-to-date"
   exit 0
diff --git a/doc/docker.adoc b/doc/docker.adoc
index ec5277f8..e2632333 100644
--- a/doc/docker.adoc
+++ b/doc/docker.adoc
@@ -30,7 +30,7 @@ docker compose up -d # will build and start the docker container on port 9001 wi
 Starting dev server:
 
 ```
-docker compose exec app bash -c "./src/bin/run.sh"
+docker compose exec app bash -c "./bin/run.sh"
 ```
 
 For production, please create your own docker compose file and change the `target` property in the build section to `production`. In addition, change the NODE_ENV in environment to production. For instance:
diff --git a/docker-compose.yml b/docker-compose.yml
index 189c23f9..4efb74da 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -15,10 +15,10 @@ services:
     tty: true
     stdin_open: true
     volumes:
+      # no volume mapping of node_modules as otherwise the build-time installed plugins will be overwritten with the mount
+      # the same applies to package.json and pnpm-lock.yaml in root dir as these would also get overwritten and build time installed plugins will be removed
       - ./src:/opt/etherpad-lite/src
-      - ./package.json:/opt/etherpad-lite/package.json
-      - node_modules:/opt/etherpad-lite/src/node_modules
-      - pnpm-store:/home/etherpad/.local/share/pnpm/store/v3
+      - ./bin:/opt/etherpad-lite/bin
     depends_on:
       - postgres
     environment:
@@ -60,6 +60,4 @@ services:
       - postgres_data:/var/lib/postgresql/data/pgdata
 
 volumes:
-  postgres_data:
-  node_modules:
-  pnpm-store:
\ No newline at end of file
+  postgres_data:
\ No newline at end of file
diff --git a/package.json b/package.json
index 77ccdbc6..891edbd5 100644
--- a/package.json
+++ b/package.json
@@ -9,8 +9,8 @@
     "editor"
   ],
   "bin": {
-    "etherpad-healthcheck": "src/bin/etherpad-healthcheck",
-    "etherpad-lite": "src/bin/run"
+    "etherpad-healthcheck": "bin/etherpad-healthcheck",
+    "etherpad-lite": "bin/run"
   },
   "scripts": {
     "lint": "pnpm --filter ep_etherpad-lite run lint",
diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml
index e69de29b..ced0baca 100644
--- a/pnpm-workspace.yaml
+++ b/pnpm-workspace.yaml
@@ -0,0 +1,2 @@
+packages:
+  - src
\ No newline at end of file
diff --git a/src/package.json b/src/package.json
index 784efd9f..ba392899 100644
--- a/src/package.json
+++ b/src/package.json
@@ -75,7 +75,7 @@
     "wtfnode": "^0.9.1"
   },
   "bin": {
-    "etherpad-healthcheck": "bin/etherpad-healthcheck",
+    "etherpad-healthcheck": "../bin/etherpad-healthcheck",
     "etherpad-lite": "node/server.ts"
   },
   "devDependencies": {
diff --git a/src/tests/frontend/travis/runner.sh b/src/tests/frontend/travis/runner.sh
index 7796bc2e..c2c2907e 100755
--- a/src/tests/frontend/travis/runner.sh
+++ b/src/tests/frontend/travis/runner.sh
@@ -10,7 +10,7 @@ try() { "$@" || fatal "'$@' failed"; }
 MY_DIR=$(try cd "${0%/*}" && try pwd -P) || exit 1
 try cd "${MY_DIR}/../../../.."
 
-log "Assuming src/bin/installDeps.sh has already been run"
+log "Assuming bin/installDeps.sh has already been run"
 (cd src && npm run dev --experimental-worker "${@}" &
 ep_pid=$!)